[BioC] error while loading the genefilter package [R 2.8.1. on Mac OSX 10.5.6]
paboyoun at fhcrc.org
Wed Apr 15 18:27:05 CEST 2009
The problem is in the version of the genefilter Mac OS X 10.5 (Leopard)
binary package you are using. I just downloaded genefilter version 1.22
for BioC 2.3 from bioconductor.org and don't see the dynamic linking to
libgfortran that is suggested by your error message:
sandbox$ otool -L genefilter/libs/i386/genefilter.so
genefilter.so (compatibility version 0.0.0, current version 0.0.0)
(compatibility version 2.8.0, current version 2.8.0)
(compatibility version 150.0.0, current version 476.15.0)
/usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current
/usr/lib/libgcc_s.1.dylib (compatibility version 1.0.0, current
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current
Try to reinstall genefilter using biocLite("genefilter") and let me know
if the problem persists. Perhaps it is with a different library. Include
your sessionInfo() in your response so I can help troubleshoot any
problems that arise.
Massimo Pinto wrote:
> Greetings BioC list readers,
> on a Mac OSX 10.5.6 with R 2.8.1 I have successfully installed a series of
> packages by typing the following code on the R Console.
> however, this is what I am getting when I try to load genefilter, which is
> required by the package Agi4x44PreProcess
> Loading required package: Biobase
> Loading required package: tools
> Welcome to Bioconductor
> Vignettes contain introductory material. To view, type
> 'openVignette()'. To cite Bioconductor, see
> 'citation("Biobase")' and for packages 'citation(pkgname)'.
> Loading required package: survival
> Loading required package: splines
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> unable to load shared library
> 6): Library not loaded: /usr/local/lib/libgfortran.2.dylib
> Referenced from:
> Reason: image not found
> Error: package/namespace load failed for 'genefilter'
> There is no /Library/Frameworks/ directory on my disk. Looks like I have got
> a messy installation. Does this look familiar to any of you?
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