[BioC] KEGG pathway IDs ,issing

Daniel Brewer daniel.brewer at icr.ac.uk
Fri Apr 17 17:39:03 CEST 2009

Dear list,

I am fiddling around with KEGG.db and KEGGSOAP and I am finding that
some of the networkd in KEGG.db are not available through the KEGGSOAP
API.  FOr example,

hsa05030 : Amyotrophic lateral sclerosis (ALS)

When I search for the name on the KEGG website I get a different number
e.g. hsa05014.

Is this because the KEGG.db annotation package is old?

> sessionInfo()
R version 2.8.1 (2008-12-22)


attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
 [1] KEGG.db_2.2.5       org.Hs.eg.db_2.2.6  RSQLite_0.7-1
 [4] DBI_0.2-4           AnnotationDbi_1.4.3 Biobase_2.2.2
 [7] KEGGSOAP_1.16.0     SSOAP_0.4-6         RCurl_0.94-1
[10] XML_2.3-0           reshape_0.8.2       plyr_0.1.5



Daniel Brewer, Ph.D.

Institute of Cancer Research
Molecular Carcinogenesis
Email: daniel.brewer at icr.ac.uk

The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP.

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