[BioC] crlmm and Illumina Infinium arrays
mritchie at wehi.EDU.AU
Thu Apr 30 04:15:33 CEST 2009
I'm glad to hear you were able to read in the data OK.
You will need a chip specific package to proceed further, and as yet I
haven't made any of these available on BioC (beta versions are sitting
around on my harddrive). I'll let you know as soon as they are online.
> I am trying to get copy number estimates for Illumina 660W-Quad and
CytoSNP-12 bead arrays with package crlmm.
> I have successfully read in the *.idat files. But when continuing the
crlmmIllumina function requires the specification of a chip description
file. Are these files yet available somewhere? All I have are the
manifest files (*.bpm) from GenomeStudio.
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