[BioC] Installation of hmyriB36

David Edwards David.Edwards at agrsci.dk
Thu Apr 30 12:49:16 CEST 2009

Dear list

I am attempting to install the library hmyriB36 on a windows XP machine. The following occurs

> source("http://bioconductor.org/biocLite.R")
Warning messages:
1: In safeSource() : Redefining 'biocinstall'
2: In safeSource() : Redefining 'biocinstallPkgGroups'
3: In safeSource() : Redefining 'biocinstallRepos'
>     biocLite("hmyriB36")
Running biocinstall version 2.4.10 with R version 2.9.0 
Your version of R requires version 2.4 of Bioconductor.
Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.9
trying URL 'http://bioconductor.org/packages/2.4/data/experiment/bin/windows/contrib/2.9/hmyriB36_0.99.0.zip'
Content type 'application/zip' length 93084013 bytes (88.8 Mb)
opened URL
downloaded 88.8 Mb

package 'hmyriB36' successfully unpacked and MD5 sums checked

The downloaded packages are in
        C:\Documents and Settings\daed\Local Settings\Temp\RtmpbiJFRg\downloaded_packages
updating HTML package descriptions
> library(hmyriB36)
Loading required package: GGBase
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: GSEABase
Loading required package: AnnotationDbi
Loading required package: annotate
Loading required package: graph
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Error in loadNamespace(name) : there is no package called 'Ruuid'
Error in as.environment(pos) : 
  no item called "newtable" on the search list
Error: package 'GGBase' could not be loaded
> data(hmyriB36)
Warning message:
In data(hmyriB36) : data set 'hmyriB36' not found

What should I do? Any help would be gratefully received.

BR David Edwards 

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