[BioC] P-values returned from siggenes's sam() function

Michal Blazejczyk michal.blazejczyk at mail.mcgill.ca
Thu Apr 30 19:45:25 CEST 2009

Hi everyone,

I have a fairly technical question.  We are calling the sam() function from packages siggenes:
  result <- sam( ...... )
and then getting the p-values like this:
  result at p.value

The Help for function sam() says that these are "raw, unadjusted p-values of the genes".

Does it mean an FDR function such as mt.rawp2adjp() from multtest can be safely used on these values?

Michal Blazejczyk
FlexArray Lead Developer

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