[BioC] Error in AnnotationDbi 1.7.8

Simon Anders anders at ebi.ac.uk
Thu Aug 6 16:42:22 CEST 2009


Hi

I've just tried to update my Bioc 2.5 installation (on Ubuntu Intrepid 
x86_64) to the current packages, and AnnotationDbi 1.7.8 fails to install:

---8<---
* installing *source* package ‘AnnotationDbi’ ...
[...]
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Error in rematchDefinition(definition, fdef, mnames, fnames, signature) :
   arguments after '...' in the generic (all.names) must appear in the 
method, in the same place at the end of the argument list
Error : unable to load R code in package 'AnnotationDbi'
---8<---

Note that the build cluster currently reports the same error message on 
gewurz and liverpool (the Windows machines), so I suppose you are aware 
of the problem. However, I wanted to add that I observe the same error 
on my Linux box too, even though wilson2 seems to see no problem.

The error occurred with v1.7.8; v1.7.7 is fine.

Cheers
   Simon

 > sessionInfo()
R version 2.10.0 Under development (unstable) (2009-06-26 r48838)
x86_64-unknown-linux-gnu

locale:
  [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C
  [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8
  [5] LC_MONETARY=C              LC_MESSAGES=en_GB.UTF-8
  [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C
  [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] tools_2.10.0



+---
| Dr. Simon Anders, Dipl.-Phys.
| European Molecular Biology Laboratory (EMBL), Heidelberg
| preferred (permanent) e-mail: sanders at fs.tum.de



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