[BioC] can't install with biocLite

[Marek, Kurt]

It downloads but never installs. I looked at the server it was trying  
to install the biaries from and there is no longer a macosx directory.  
I changed the biocLite flag type to source and it installed fine.  
Perhaps the osx binaries just aren't available for 2.5 yet. Anyway,  
problem solved. Thanks for your replies.

Kurt

On Dec 8, 2009, at 7:22, "Steve Lianoglou" <mailinglist.honeypot at gmail.com 
 > wrote:

> Hi Kurt,
>
> On Dec 7, 2009, at 7:48 PM, Vincent Carey wrote:
>
>> it is a warning.  it is not an error.  it implies that a certain set
>> of resources has not been compiled for a specific version
>
> To add to this: if you let biocLite continue to run, you should see  
> it starting to download + install the necessary packages.
>
> Do you?
>
> -steve
>
>>
>> On Mon, Dec 7, 2009 at 3:11 PM, Marek, Kurt <kmarek at ucsd.edu> wrote:
>>> I'm having trouble installing 2.5 on R 2.10 on a Mac running 10.6.  
>>> I get the following error:
>>> Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.10
>>>
>>> when I enter:
>>> source("http://bioconductor.org/biocLite.R")
>>> biocLite()
>>>
>>> I initially thought this was because I was running R64, but I re- 
>>> installed R and am still getting the same error. Can anyone help me?
>>>
>>> thanks!
>>> Kurt
>>>
>>>
>>>
>>>
>>> Kurt Marek, Ph.D.
>>>
>>> Division of Biological Sciences, Neurobiology Section
>>> University of California, San Diego
>>>
>>> _______________________________________________
>>> Bioconductor mailing list
>>> Bioconductor at stat.math.ethz.ch
>>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>>> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>>>
>>
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor at stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
>  |  Memorial Sloan-Kettering Cancer Center
>  |  Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact
>