[BioC] Keep getting warning messages of package 'XYZ' was built under R version 2.8.1

Daren Tan daren76 at hotmail.com
Sun Feb 22 14:12:19 CET 2009


Please clarify my understanding. 
 
When R version 2.8.0 was released, all packages in Bioconductor version 2.3 was built with it. During this period, any installation of packages in bioconductor 2.3 did not give any warnings. With the minor release R version 2.8.1, Bioconductor version 2.3 was rebuilt with it. Any installation of packages in bioconductor 2.3 will now give warnings that they were built with 2.8.1. 
 
If my understanding is right, would it better for Bioconductor to have minor release like 2.3.X in synchrony with R 2.8.X ?

________________________________
> Date: Sun, 22 Feb 2009 05:28:29 -0500
> Subject: Re: [BioC] Keep getting warning messages of package 'XYZ' was built under R version 2.8.1
> From: stvjc at channing.harvard.edu
> To: daren76 at hotmail.com
> CC: bioconductor at stat.math.ethz.ch
>
> This is a warning. It is telling you that there is a mismatch between the version of R that you are running (2.8.0,
> which is not current) and 2.8.1 (the current version, that we use to build the packages). There is no indication
>
> that anything is "broken", but it is not really possible to give any assurances of the sort you seek. To get rid
> of the warning, which will only be observed at install time, you would need to upgrade R to 2.8.1. If you run the
>
> examples of the package, or build the vignette, and find that the computations you generate agree with those
> of the vignette, that would be some assurance that nothing is drastically wrong.
>
>
> On Sun, Feb 22, 2009 at 1:18 AM, Daren Tan> wrote:
>
>
>
>
>
> I just installed another bioconductor package "seqinr". I only noticed the warning message today, and fear that my R or bioconductor is broken. Please give me some assurance it is working fine. I dread to reinstall R and bioconductor again.
>
>
>
>
>> library("seqinr")
>
> Warning message:
>
> package 'seqinr' was built under R version 2.8.1
>
>
>
>> sessionInfo()
>
> R version 2.8.0 (2008-10-20)
>
> i386-pc-mingw32
>
> locale:
>
> LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
>
> attached base packages:
>
> [1] stats graphics grDevices utils datasets methods base
>
> other attached packages:
>
> [1] seqinr_2.0-2
>
> loaded via a namespace (and not attached):
>
> [1] tools_2.8.0
>
>
>
> _______________________________________________
>
> Bioconductor mailing list
>
> Bioconductor at stat.math.ethz.ch
>
> https://stat.ethz.ch/mailman/listinfo/bioconductor
>
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>
>
_________________________________________________________________
[[elided Hotmail spam]]



More information about the Bioconductor mailing list