[BioC] Is there any way to get M-values in topTable?

[James W. MacDonald]

Hi Prashantha,

M-values _are_ log fold changes, so the default of limma is to supply 
these data. IIRC, topTable() previously labeled this column 'M', but 
Gordon changed that a couple of years ago (or so).

Best,

Jim



Prashantha Hebbar wrote:
> Dear Friends,
> 
>  
> 
> I want to know, is there in possibility to get M- values instead of log fold
> change value (logFC) in tapTable command used in LIMMA package? In case
> "yes", Please let me know how to do it?
> 
>  
> 
> Thanking you in anticipation.
> 
>  
> 
> Regards,
> 
>  
> 
> Prashantha
> 
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Hildebrandt Lab
8220D MSRB III
1150 W. Medical Center Drive
Ann Arbor MI 48109-0646
734-936-8662