[BioC] Using bgAdjust.affy for lumi

Michal Blazejczyk michal.blazejczyk at mail.mcgill.ca
Fri Jul 10 18:07:57 CEST 2009


I was wandering if someone knows what -- in practice --
is the difference between using a background correction
method bgAdjust.affy for lumi, and using other methods
such as forcePositive.  I.e. what will bgAdjust.affy do
in practice on Illumina data.

Best regards,

Michal Blazejczyk
FlexArray Lead Developer
McGill University and Genome Quebec Innovation Centre

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