[BioC] biomaRt archives

[Julien Roux]

Thanks a lot!
Just don't forget the final "/" in the host name ;)
 > listMarts(host="may2009.archive.ensembl.org/biomart/martservice/")
Regards
Julien

Rhoda Kinsella a écrit :
> Hi Julien,
> You can connect to the ensembl.org archive marts by specifying the URL 
> of the archive version you would like to use:
>
> > listMarts(host="may2009.archive.ensembl.org/biomart/martservice")
>                biomart              version
> 1 ENSEMBL_MART_ENSEMBL           Ensembl 54
> 2     ENSEMBL_MART_SNP Ensembl Variation 54
> 3    ENSEMBL_MART_VEGA              Vega 35
> 4             REACTOME   Reactome(CSHL US)
> 5     wormbase_current   WormBase (CSHL US)
> 6                pride       PRIDE (EBI UK)
>
>
> To find the correct URL to use, click on the biomart link in the 
> archive version of Ensembl that you are interested in.
> The list of archive versions can be found here:
>
> http://www.ensembl.org/info/website/archives/index.html
>
> I hope that helps,
> Regards,
> Rhoda
>
>
>
> On 16 Jul 2009, at 11:25, Julien Roux wrote:
>
>> Dear mailing list,
>>
>> I am willing to use the biomart archives for ensembl 53, but when 
>> using the command:
>> > listMarts(archive = TRUE)
>> ... the most recent ensembl release in 51
>> Is there a reason for that?
>>
>> Thanks for your help
>> Julien
>>
>> PS: I am using R 2.9.1 with bioconductor 2.4 and biomaRt 2.0.0
>>
>> -- 
>> Julien Roux, PhD student
>> http://bioinfo.unil.ch/
>> Department of Ecology and Evolution
>> Biophore, University of Lausanne, 1015 Lausanne, Switzerland
>> tel: +41 21 692 4221    fax: +41 21 692 4165
>>
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor at stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> Search the archives: 
>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>
> Rhoda Kinsella Ph.D.
> Ensembl Bioinformatician,
> European Bioinformatics Institute (EMBL-EBI),
> Wellcome Trust Genome Campus,
> Hinxton
> Cambridge CB10 1SD,
> UK.
>


-- 
Julien Roux, PhD student
http://bioinfo.unil.ch/
Department of Ecology and Evolution
Biophore, University of Lausanne, 1015 Lausanne, Switzerland
tel: +41 21 692 4221    fax: +41 21 692 4165