[BioC] Software to find the area of a shape in an image

Susan Holmes susan at stat.Stanford.EDU
Wed Jul 22 18:32:54 CEST 2009

Gemident is available for this type of task,
see http://www.jstatsoft.org/v30/i10
for article and www.gemident.com
for the software and demos, it should automatically
segment your picture.
Susan Holmes


On Wed, 22 Jul 2009, Daniel Brewer wrote:

> Hi,
> We have a series of tissue slices that have tumour within them and we
> would like to quantify the area within each slice that is occupied by
> tumour.  Is there a cheap or free program that will assist in this?
> either by automatically looking for colours or for a user to manual draw
> round a shape and it give you the area?
> Not exactly bioconductor related but the idea is to quantify this and
> then do various bioinformatics on it.  Hope you forgive me.
> Thanks
> Dan
> -- 
> **************************************************************
> Daniel Brewer, Ph.D.
> Institute of Cancer Research
> Molecular Carcinogenesis
> Email: daniel.brewer at icr.ac.uk
> **************************************************************
> The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP.
> This e-mail message is confidential and for use by the a...{{dropped:2}}
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

More information about the Bioconductor mailing list