[BioC] BSGenomeForge

Hervé Pagès hpages at fhcrc.org
Mon Jul 27 18:46:31 CEST 2009

Hi Gemma,

[cc'ing the BioC mailing list]

Gemma Danks wrote:
> Dear Herve,
> I am trying to forge a BSgenome data package.  I was wondering if there 
> is a limit to the number of sequence files that can be used in 
> BSgenomeForge?  I am having problems using more than 1200 sequence files.

In theory there is no limit to the number of sequence files.
Can you provide more details about the problems you are having?
(Any error message you get, the content of your seed file, your
sessionInfo(), etc... anything that could help us diagnose the

Also have you tried to forge a small BSgenome data package with only
a couple of sequence files, just to make sure that you got things
right and that your problems are really due to the big number of
sequence files?


> Best wishes,
> Gemma Danks

Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
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