[BioC] Problem with Ringo

[Heidi Dvinge]

Hi Hari,

yep, it's definitely your old version of R+packages that's the problem. I
don't think extractProbeAnno was introduced in Ringo until version 1.6 or
something like that.  So it literally doesn't exist in your package, which
is why you get the error message when you try to run it. You'll need to
update to the latest version, and then things should work fine.

Cheers
\Heidi

> Dear all,
> I get the following error when running  extractProbeAnno:
> Error: could not find function "extractProbeAnno"
>
> Following is the version of R and other info:
>> sessionInfo()
> R version 2.6.2 (2008-02-08)
> ia64-unknown-linux-gnu
>
> attached base packages:
> [1] tools     stats     graphics  grDevices utils     datasets  methods
> [8] base
>
> other attached packages:
>  [1] Ringo_1.2.0          RColorBrewer_1.0-2   vsn_3.2.1
>  [4] affy_1.16.0          preprocessCore_1.0.0 affyio_1.6.1
>  [7] limma_2.12.0         geneplotter_1.16.0   lattice_0.17-7
> [10] annotate_1.16.1      xtable_1.5-5         AnnotationDbi_1.0.6
> [13] RSQLite_0.6-8        DBI_0.2-4            Biobase_1.16.3
>
> loaded via a namespace (and not attached):
> [1] grid_2.6.2         KernSmooth_2.22-22 rcompgen_0.1-17
>
> So far I can use most functions in Ringo. This is the first time I am
> having
> an issue. Could it be the version of R I have (R version 2.6.2
> (2008-02-08))?
>
> I really appreciate any help.
>
> Best,
> Hari
>
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