[BioC] Fisher's test on my annotated categories

Francois Pepin fpepin at cs.mcgill.ca
Thu Jul 30 18:09:44 CEST 2009

Hi Adrian,

One way would be use the Category package to use your own annotations. 
?hyperGTest can point you in the right direction, but it's not trivial 
if you're not familiar with R object-oriented programming.

In a hurry, I tend to just code it up myself and feed it through 

I've been wanting to make hyperGTest work with GSEABase, but haven't had 
the time to do it yet.


Adrian Johnson wrote:
> Dear Group,
> is there any package in bioconductor that allows me to apply  Fishers
> exact test on my own annoated categories. I would be using the entire
> genome or chip as the reference.
> Thank you.
> Ad.
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

More information about the Bioconductor mailing list