[BioC] Fixes to limma treat() function

Laurent Gautier laurent at cbs.dtu.dk
Mon Jun 15 16:54:44 CEST 2009


Nice.
Thanks for the quick fix.

I will be waiting for the builds to appear on the bioconductor
repositories.


L.


> I've committed a major bug fix to the treat() function of the limma 
> package.  Users of this function should re-install limma 2.18.2 or 2.19.2 
> from Bioconductor.
> 
> I've introduced a new function topTreat().  Here's an example calling 
> sequence:
> 
>    fit <- lmFit(y, design)
>    fit <- treat(fit, lfc=0.1)
>    topTreat(fit, coef=2)
> 
> Best wishes
> Gordon
> 
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