[BioC] Graphviz in Vista64

Kasper Daniel Hansen khansen at stat.berkeley.edu
Mon Mar 2 17:47:55 CET 2009


Most likely something is wrong with your graphviz installation, but  
since you don't provide any details about that, it is impossible to  
help. We would also like to see the actual crash output from R or a  
better description of what you mean by "crash"

Kasper

On Mar 2, 2009, at 7:48 , Sim, Fraser wrote:

> Hi Bioconductors,
>
> Has anyone successfully used the Rgraphviz package to plot graphs in R
> under Vista64??
>
> I have found that RGUI.EXE crashes upon execution of the layoutGraph
> step.
>
> Running the following reliably crashes R.
>
> library("Rgraphviz")
> g = new("graphNEL", nodes = c("a","b","c"))
> debug(Rgraphviz:::graphLayout)
> sessionInfo()
> layoutGraph(g)
>
> Thanks,
> Fraser
>
> PS. The crash occurs in :
>
> Rgraphviz:::graphLayout
> .Call("Rgraphviz_doLayout",graph,as.integer(type),PACKAGE="Rgraphviz")
>
> PPS.
> sessionInfo()
>
> R version 2.8.1 (2008-12-22)
> i386-pc-mingw32
>
> locale:
> LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
> States.1252;LC_MONETARY=English_United
> States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
>
> attached base packages:
> [1] grid      stats     graphics  grDevices utils     datasets   
> methods
>
> [8] base
>
> other attached packages:
> [1] Rgraphviz_1.20.3 graph_1.20.0     rcom_2.0-4       rscproxy_1.0-12
>
> loaded via a namespace (and not attached):
> [1] cluster_1.11.12 tools_2.8.1
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor



More information about the Bioconductor mailing list