[BioC] ANOVA p value calculation
gasparj at uni-koeln.de
Wed Mar 11 18:19:21 CET 2009
I wish to do ANOVA p value computation with Bioconductor.
I have RMA normalized dataset in tab delimited text.
= ".",as.is =TRUE,na.strings = "NA",
colClasses = NA,check.names = FALSE,strip.white =
FALSE, blank.lines.skip = TRUE,
allowEscapes = FALSE, flush = FALSE,encoding = "unknown")
 31528 51
17 * 3 = 51 There are 17 different cell line type samples with 3
I wish to do ANOVA - p value calculation for finding out the
differentially expressed genes.
Kindly help me out to use the right Bioconductor package. Using multtest
package I tried to do F stat but could not. When I try
the R console window goes off. Could be due to many number of couloumns?.
Please help me out to find a solution.
Thanking you in advance,
With kind regards,
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