[BioC] Please add hugene10stv1.cdf

James W. MacDonald jmacdon at med.umich.edu
Fri Mar 13 13:58:13 CET 2009

Hi Matthew,

You might want to look here for options for analyzing exon array data:


Note that affylmGUI isn't an option as the affy package doesn't support 
these chips.



Gormley, Matthew wrote:
> Hello,
> I am trying to utilize affylmGUI (using limma in R) to analyze Affymetrix exon array data. Currently there is no way to manually specify a Chip Definition File (CDF) (it is downloaded automatically from http://www.bioconductor.org/data/metaData.html). The cdf I require, 
> hugene10stv1, is not available. Can you please add this cdf to your metadata. Thank you so much.
> Sincerely,
> Matthew Gormley
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James W. MacDonald, M.S.
Douglas Lab
5912 Buhl
1241 E. Catherine St.
Ann Arbor MI 48109-5618

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