[BioC] XPS vs APT

[cstrato]

Hi,

Please have a look at vignette "APTvsXPS.pdf" and the corresponding 
source code which you can find in "../xps/examples/script4xps2apt.R".
For rma you can use function "rma()", for dabg use function "dabg()". 
Please note that "plier" is not supported.

Regards
Christian
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e.m.a.i.l:        cstrato at aon.at
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Daren Tan wrote:
> I am migrating from affymetrix apt-probeset-summarize to XPS. How do I
> get expression values via XPS corresponding to the following
> apt-probeset-summarize options ?
>
> 1) "rma-bg,quant-norm.sketch=-1.usepm=true.bioc=true,pm-only,med-polish"
> 2) "quant-norm.sketch=-1.bioc=true,pm-only,plier"
> 3) "quant-norm.sketch=-1.bioc=true,pm-gcbg,plier"
> 4) "pm-only,dabg"
> 5) "quant-norm.sketch=-1.bioc=true,pm-only,iter-plier"
> 6) "quant-norm.sketch=-1.bioc=true,pm-gcbg,iter-plier"
>
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