[BioC] assemble DNAString complete coding sequence from exons?
pshannon at systemsbiology.org
Mon Mar 23 22:46:00 CET 2009
I am sure there is an elegant way to do this. Could somebody clue me
I have (in a simple case) two exons for a gene on the + strand, and a
the full DNAString sequence of its chromosome.
My naive technique for constructing a DNAString of the entire coding
1) paste together toString (subseq (seq.chrom, exon.start,
exon.end)) for each exon
2) construct a DNAString from the resulting chars.
There must be a better way. What is it?
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