[BioC] KEGGSOAP install problem

Daniel Brewer daniel.brewer at icr.ac.uk
Tue May 5 16:32:57 CEST 2009


I am trying to install KEGGSOAP in the 2.4 version of bioconductor in OS X

> biocLite("KEGGSOAP")
Running biocinstall version 2.4.10 with R version 2.9.0
Your version of R requires version 2.4 of Bioconductor.
Warning in install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies,  :
  argument 'lib' is missing: using '/Users/dbrewer/Library/R/2.9/library'
Warning: unable to access index for repository
Warning: dependency ‘SSOAP’ is not available

Any ideas what is going on here and how I can fix it?



> sessionInfo()
R version 2.9.0 (2009-04-17)


attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] tools_2.9.0

Daniel Brewer, Ph.D.

Institute of Cancer Research
Molecular Carcinogenesis
Email: daniel.brewer at icr.ac.uk

The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP.

This e-mail message is confidential and for use by the a...{{dropped:2}}

More information about the Bioconductor mailing list