[BioC] How to download multiple packages

Narendra Kaushik kaushiknk at Cardiff.ac.uk
Fri May 15 14:29:25 CEST 2009


I have just dowloaded Bioconductor 2.4, but I am not able to download multiple packages in one go although I can downlaod packages one by one.

> biocLite()
Running biocinstall version 2.4.10 with R version 2.9.0 
Your version of R requires version 2.4 of Bioconductor.
Will install the following packages:
 [1] "affy"         "affydata"     "affyPLM"      "annaffy"      "annotate"     "Biobase"      "biomaRt"     
 [8] "Biostrings"   "DynDoc"       "gcrma"        "genefilter"   "geneplotter"  "hgu95av2.db"  "limma"       
[15] "marray"       "multtest"     "vsn"          "xtable"       "affyQCReport"
Please wait...

All downloaded, then when I try to download, I get error - 

> biocLite(C("logicFS","logitT","LPE","LPEadj","maanova","macat","maCorrPlot","maDB"))
Running biocinstall version 2.4.10 with R version 2.9.0 
Your version of R requires version 2.4 of Bioconductor.
Error in C("logicFS", "logitT", "LPE", "LPEadj", "maanova", "macat", "maCorrPlot",  : 
  object not interpretable as a factor
> sessionInfo()
R version 2.9.0 (2009-04-17) 
i386-pc-mingw32 

locale:
LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United Kingdom.1252;LC_MONETARY=English_United Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] tools_2.9.0 

Thanks in advance 

Narendra 



More information about the Bioconductor mailing list