[BioC] R2.10 and BioC 2.5 where to report bugs?

Paul Leo p.leo at uq.edu.au
Mon May 25 08:21:14 CEST 2009


2 quick questions

1)
So I recent decided to stick with the subversion R2.10 and to recompile
weekly and use BioC2.5. (linux-ubuntu) Sometimes, as I guess maybe
expected, I get errors in various libraries .... Not sure is that is a
"Good idea" or what others do..

Dumb question, is there a different mailing list where these errors
should be reported or are those reported here ...  given they are on the
development version....

2)
PS I have an irritating problem with tcltk...
does anyone with ubuntu know if the tcl8.5 and tcl8.5-dev libraries are
all that should  are required to fix this?

pleo at BIOINFORM01-ubuntu:/media/Bioinform-D/Research/R.packages
$ /home/pleo/R_latest/bin/R CMD INSTALL --clean tcltk2_1.0-8.tar.gz 
* installing to library ‘/home/pleo/R_latest/library’
* installing *source* package ‘tcltk2’ ...
** R
** inst
** preparing package for lazy loading
Error in firstlib(which.lib.loc, package) : 
  Tcl/Tk support is not available on this system
Error : package 'tcltk' could not be loaded
ERROR: lazy loading failed for package ‘tcltk2’
* removing ‘/home/pleo/R_latest/library/tcltk2’
pleo at BIOINFORM01-ubuntu:/media/Bioinform-D/Research/R.packages$ 





R version 2.10.0 Under development (unstable) (2009-05-24 r48603) 
x86_64-unknown-linux-gnu 

locale:
 [1] LC_CTYPE=en_AU.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_AU.UTF-8        LC_COLLATE=en_AU.UTF-8    
 [5] LC_MONETARY=C              LC_MESSAGES=en_AU.UTF-8   
 [7] LC_PAPER=en_AU.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods
base     

other attached packages:
[1] biomaRt_2.1.0   lattice_0.17-25 MASS_7.3-0     

loaded via a namespace (and not attached):
[1] grid_2.10.0  RCurl_0.95-1 tools_2.10.0 XML_2.3-0



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