[BioC] Human Gene ST 1.0 probeset controls

Hooiveld, Guido Guido.Hooiveld at wur.nl
Wed Nov 4 21:54:47 CET 2009


Hi Javier,

In our facility we do add the hybridization and spike-in controls to the samples when arraying them on mouse gene st arrays (as recommended by affy), but I noticed that these are indeed not listed in the annotation files...??
Something for affymetrix to answer?

Regards,
Guido

------------------------------------------------ 
Guido Hooiveld, PhD 
Nutrition, Metabolism & Genomics Group
Division of Human Nutrition 
Wageningen University 
Biotechnion, Bomenweg 2 
NL-6703 HD Wageningen 
the Netherlands 
tel: (+)31 317 485788 
fax: (+)31 317 483342 
internet:   http://nutrigene.4t.com
email:      guido.hooiveld at wur.nl



> -----Original Message-----
> From: bioconductor-bounces at stat.math.ethz.ch 
> [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of 
> Javier Pérez Florido
> Sent: 04 November 2009 20:30
> To: bioconductor at stat.math.ethz.ch
> Subject: [BioC] Human Gene ST 1.0 probeset controls
> 
> Dear list,
> I would like to know if the GeneChip Human Gene ST 1.0 array 
> has some gene controls (like AFFX genes in other Affymetrix 
> technologies).
> Thanks in advance,
> Javier
> 
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