[BioC] Converting Genotyping result for PLINK

[Peter Ganske]

Hello everybody,
i want to convert my genotyping results (from CRLMM) to PLINK.
For an case/control- study I genotyped 100 Affymetrix Human-Wide SNP Arrays 6.0. So I got my results like this (in extracts)


              K_125.CEL K_128.CEL K_129.CEL K_134.CEL
SNP_A-2131660         2         3         3         3
SNP_A-1967418         3         3         3         3
SNP_A-1969580         3         3         3         3
SNP_A-4263484         2         2         3         3


Genotype calls (1-AA; 2-AB; 3-BB)




I want to use PLINK for my study and therefor I need an pedigree- file and an map- file. The ped- file is easy to create. It looks like 
Patient01Patient010012
Patient02Patient020021


and so on....


Is there any package or program, to convert my results for PLINK? Would be helpful, if there is anybody who can help me out. For this I need an map file and an peed- file. I read something about an "advanced" ped-file like this:


Patient01Patient010012    A A  A C
Patient02Patient020021    C C  ....


Any ideas? 
Thanks in advance
All the best
Peter





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