[BioC] problem with justRMA in 2.10.0

[Fraser Sim]

FYI. This problem was fixed in affy_1.24.1

-----Original Message-----
From: bioconductor-bounces at stat.math.ethz.ch
[mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of Fraser Sim
Sent: Wednesday, November 04, 2009 9:40 AM
To: bioconductor at stat.math.ethz.ch
Subject: [BioC] problem with justRMA in 2.10.0

I'm getting a cryptic error message when trying to run justRMA on a folder
of files, with the file names specified in celFiles. I am not setting the
phenoData or protocolData at this point and just want the eset populated
with the default pData. This code worked fine under 2.9.2. Thanks, Fraser

Here's my code:

> library(affy)
> eset <- justRMA(filenames = celFiles)
Error in validObject(.Object) : 
  invalid class "AffyBatch" object: 1: sample numbers differ between
phenoData and protocolData
invalid class "AffyBatch" object: 2: sampleNames differ between phenoData
and protocolData
> all(celFiles %in% list.files())
[1] TRUE
> sessionInfo()
R version 2.10.0 (2009-10-26) 
i386-pc-mingw32 

locale:
[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United
States.1252   
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C

[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base     

other attached packages:
[1] affy_1.24.0    Biobase_2.6.0  rcom_2.2-1     rscproxy_1.3-1

loaded via a namespace (and not attached):
[1] affyio_1.14.0        preprocessCore_1.8.0 tools_2.10.0

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