[BioC] Package/Function to calculate CpG density

[Neel Aluru]

Hey Tim,

I just noticed it this week. Follow the link to Rafael Irizarry web  
site (http://rafalab.jhsph.edu/). They have published a paper on  
defining CpG islands using R package. Click on "New CpG islands" link  
in the research overview page.

Neel

On Nov 6, 2009, at 4:35 PM, Tim Smith wrote:

> Hi,
>
> Is there a package that has a function to calculate the CpG density  
> between specific locations on a chromosome?
> thanks!
>
>
>
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Neel Aluru
Postdoctoral Scholar
Biology Department
Woods Hole Oceanographic Institution
Woods Hole, MA 02543
USA
508-289-3607