[BioC] problem on install package RBGL

Li Yun yli01 at sibs.ac.cn
Thu Nov 12 15:44:04 CET 2009


is RBGL 1.20.0 old?

Li Long 写道:
> you are using an old version of RBGL.  The latest release has taken care
> of this issue.
>
> Li
>
>   
>> hi,
>>   I met a problem when install RBGL package.
>> here is
>> the error information:
>> * Installing
>> *source* package ‘RBGL’ ...
>> untarring boost include
>> tree...
>> ** libs
>> g++
>> -I/usr/share/R/include     -IboostIncl 
>> -fpic  -g -O2 -c bbc.cpp -o bbc.o
>> In file included from
>> boostIncl/boost/mpl/apply.hpp:23,
>>                 
>> from boostIncl/boost/iterator/iterator_facade.hpp:34,
>>                 
>> from boostIncl/boost/generator_iterator.hpp:16,
>>                 
>> from RBGL.hpp:17,
>>                 
>> from bbc.cpp:1:
>> boostIncl/boost/mpl/apply_wrap.hpp:81:31: error:
>> missing binary operator before token "("
>> boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary
>> operator before token "("
>> In file included from
>> boostIncl/boost/mpl/bind.hpp:27,
>>                 
>> from boostIncl/boost/mpl/lambda.hpp:18,
>>                 
>> from boostIncl/boost/mpl/apply.hpp:25,
>>                 
>> from boostIncl/boost/iterator/iterator_facade.hpp:34,
>>                 
>> from boostIncl/boost/generator_iterator.hpp:16,
>>                 
>> from RBGL.hpp:17,
>>                 
>> from bbc.cpp:1:
>> boostIncl/boost/mpl/apply_wrap.hpp:81:31: error:
>> missing binary operator before token "("
>> boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary
>> operator before token "("
>> In file included from
>> boostIncl/boost/mpl/lambda.hpp:18,
>>                 
>> from boostIncl/boost/mpl/apply.hpp:25,
>>                 
>> from boostIncl/boost/iterator/iterator_facade.hpp:34,
>>                 
>> from boostIncl/boost/generator_iterator.hpp:16,
>>                 
>> from RBGL.hpp:17,
>>                 
>> from bbc.cpp:1:
>> boostIncl/boost/mpl/bind.hpp:364:31: error: missing
>> binary operator before token "("
>> boostIncl/boost/mpl/bind.hpp:531:31: error: missing binary operator
>> before token "("
>> In file included from
>> boostIncl/boost/mpl/lambda.hpp:22,
>>                 
>> from boostIncl/boost/mpl/apply.hpp:25,
>>                 
>> from boostIncl/boost/iterator/iterator_facade.hpp:34,
>>                 
>> from boostIncl/boost/generator_iterator.hpp:16,
>>                 
>> from RBGL.hpp:17,
>>                 
>> from bbc.cpp:1:
>> boostIncl/boost/mpl/aux_/full_lambda.hpp:230:31:
>> error: missing binary operator before token "("
>> In file
>> included from boostIncl/boost/iterator/iterator_facade.hpp:34,
>>                 
>> from boostIncl/boost/generator_iterator.hpp:16,
>>                 
>> from RBGL.hpp:17,
>>                 
>> from bbc.cpp:1:
>> boostIncl/boost/mpl/apply.hpp:138:31: error: missing
>> binary operator before token "("
>> In file included from
>> /usr/include/c++/4.4/backward/hash_set:59,
>>                 
>> from boostIncl/boost/graph/adjacency_list.hpp:22,
>>                 
>> from RBGL.hpp:26,
>>                 
>> from bbc.cpp:1:
>> /usr/include/c++/4.4/backward/backward_warning.h:28:2: warning: #warning
>> This file includes at least one deprecated or antiquated header which may
>> be removed without further notice at a future date. Please use a
>> non-deprecated interface with equivalent functionality instead. For a
>> listing of replacement headers and interfaces, consult the file
>> backward_warning.h. To disable this warning use -Wno-deprecated.
>> make: *** [bbc.o] error 1
>> ERROR: compilation failed for package
>> ‘RBGL’
>> * Removing
>> ‘/home/trace/R/i486-pc-linux-gnu-library/2.9/RBGL’
>>
>> The downloaded packages are in
>>    
>> ‘/tmp/Rtmp6CoA1c/downloaded_packages’
>> Warning message:
>> In install.packages(pkgs = pkgs, repos = repos, dependencies =
>> dependencies,  :
>>   installation of package 'RBGL' had
>> non-zero exit status
>> and this is my r information:
>> sessionInfo()
>> R version 2.9.2 (2009-08-24)
>>
>> i486-pc-linux-gnu
>>
>> locale:
>> LC_CTYPE=zh_CN.UTF-8;LC_NUMERIC=C;LC_TIME=zh_CN.UTF-8;LC_COLLATE=zh_CN.UTF-8;LC_MONETARY=C;LC_MESSAGES=zh_CN.UTF-8;LC_PAPER=zh_CN.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=zh_CN.UTF-8;LC_IDENTIFICATION=C
>>
>> attached base packages:
>> [1] stats    
>> graphics  grDevices utils     datasets 
>> methods   base    
>>
>> other
>> attached packages:n
>> [1] graph_1.22.5
>>
>> loaded via a
>> namespace (and not attached):
>> [1] tcltk_2.9.2 tools_2.9.2
>>
>> My g++ version is 4.4.1 ubuntu
>>
>>
>> thanks.
>>
>> LiYun
>>
>> 	[[alternative HTML version deleted]]
>>
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