[BioC] Agilent zebrafish4x44 database

Francois Pepin fpepin at cs.mcgill.ca
Thu Nov 12 21:31:00 CET 2009


Hi Neel.

I'm not sure which database you are talking about here.

I haven't used zebrafish arrays, but my experience with human and mouse 
is that there is very little variation between duplicated probes (ie 
same sequence and probe id). I would be surprised if zebrafish is any 
different, as those differences would be purely technical and only 
depend on the protocol, the reagents used and the person performing the 
manipulations.

Maybe you could clarify if I'm not reading this properly, as I'm 
confused what a database would have to do with this.

Francois

On 11/12/2009 03:19 PM, Neel Aluru wrote:
> Hello,
>
> Does any one has Agilent zebrafish 4x44 database to use for calculating % CV of replicated probes.
>
> Thank you,
>
> Neel
>
>
> Neel Aluru
> Postdoctoral Scholar
> Biology Department
> Woods Hole Oceanographic Institution
> Woods Hole, MA 02543
> USA
> 508-289-3607
>
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