[BioC] problem on install package RBGL

[Li Yun]

Thank you very much for your help, the problem has been solved.

i Long 写道:
> yes.  For R 2.10.0/BioConductor 2.5 release, RBGL is 1.22.0
>
> Li
>
>   
>> is RBGL 1.20.0 old?
>>
>> Li Long 写道:
>>     
>>> you are using an old version of RBGL.  The latest release has taken care
>>> of this issue.
>>>
>>> Li
>>>
>>>
>>>       
>>>> hi,
>>>>   I met a problem when install RBGL package.
>>>> here is
>>>> the error information:
>>>> * Installing
>>>> *source* package ‘RBGL’ ...
>>>> untarring boost include
>>>> tree...
>>>> ** libs
>>>> g++
>>>> -I/usr/share/R/include     -IboostIncl
>>>> -fpic  -g -O2 -c bbc.cpp -o bbc.o
>>>> In file included from
>>>> boostIncl/boost/mpl/apply.hpp:23,
>>>>
>>>> from boostIncl/boost/iterator/iterator_facade.hpp:34,
>>>>
>>>> from boostIncl/boost/generator_iterator.hpp:16,
>>>>
>>>> from RBGL.hpp:17,
>>>>
>>>> from bbc.cpp:1:
>>>> boostIncl/boost/mpl/apply_wrap.hpp:81:31: error:
>>>> missing binary operator before token "("
>>>> boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary
>>>> operator before token "("
>>>> In file included from
>>>> boostIncl/boost/mpl/bind.hpp:27,
>>>>
>>>> from boostIncl/boost/mpl/lambda.hpp:18,
>>>>
>>>> from boostIncl/boost/mpl/apply.hpp:25,
>>>>
>>>> from boostIncl/boost/iterator/iterator_facade.hpp:34,
>>>>
>>>> from boostIncl/boost/generator_iterator.hpp:16,
>>>>
>>>> from RBGL.hpp:17,
>>>>
>>>> from bbc.cpp:1:
>>>> boostIncl/boost/mpl/apply_wrap.hpp:81:31: error:
>>>> missing binary operator before token "("
>>>> boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary
>>>> operator before token "("
>>>> In file included from
>>>> boostIncl/boost/mpl/lambda.hpp:18,
>>>>
>>>> from boostIncl/boost/mpl/apply.hpp:25,
>>>>
>>>> from boostIncl/boost/iterator/iterator_facade.hpp:34,
>>>>
>>>> from boostIncl/boost/generator_iterator.hpp:16,
>>>>
>>>> from RBGL.hpp:17,
>>>>
>>>> from bbc.cpp:1:
>>>> boostIncl/boost/mpl/bind.hpp:364:31: error: missing
>>>> binary operator before token "("
>>>> boostIncl/boost/mpl/bind.hpp:531:31: error: missing binary operator
>>>> before token "("
>>>> In file included from
>>>> boostIncl/boost/mpl/lambda.hpp:22,
>>>>
>>>> from boostIncl/boost/mpl/apply.hpp:25,
>>>>
>>>> from boostIncl/boost/iterator/iterator_facade.hpp:34,
>>>>
>>>> from boostIncl/boost/generator_iterator.hpp:16,
>>>>
>>>> from RBGL.hpp:17,
>>>>
>>>> from bbc.cpp:1:
>>>> boostIncl/boost/mpl/aux_/full_lambda.hpp:230:31:
>>>> error: missing binary operator before token "("
>>>> In file
>>>> included from boostIncl/boost/iterator/iterator_facade.hpp:34,
>>>>
>>>> from boostIncl/boost/generator_iterator.hpp:16,
>>>>
>>>> from RBGL.hpp:17,
>>>>
>>>> from bbc.cpp:1:
>>>> boostIncl/boost/mpl/apply.hpp:138:31: error: missing
>>>> binary operator before token "("
>>>> In file included from
>>>> /usr/include/c++/4.4/backward/hash_set:59,
>>>>
>>>> from boostIncl/boost/graph/adjacency_list.hpp:22,
>>>>
>>>> from RBGL.hpp:26,
>>>>
>>>> from bbc.cpp:1:
>>>> /usr/include/c++/4.4/backward/backward_warning.h:28:2: warning:
>>>> #warning
>>>> This file includes at least one deprecated or antiquated header which
>>>> may
>>>> be removed without further notice at a future date. Please use a
>>>> non-deprecated interface with equivalent functionality instead. For a
>>>> listing of replacement headers and interfaces, consult the file
>>>> backward_warning.h. To disable this warning use -Wno-deprecated.
>>>> make: *** [bbc.o] error 1
>>>> ERROR: compilation failed for package
>>>> ‘RBGL’
>>>> * Removing
>>>> ‘/home/trace/R/i486-pc-linux-gnu-library/2.9/RBGL’
>>>>
>>>> The downloaded packages are in
>>>>
>>>> ‘/tmp/Rtmp6CoA1c/downloaded_packages’
>>>> Warning message:
>>>> In install.packages(pkgs = pkgs, repos = repos, dependencies =
>>>> dependencies,  :
>>>>   installation of package 'RBGL' had
>>>> non-zero exit status
>>>> and this is my r information:
>>>> sessionInfo()
>>>> R version 2.9.2 (2009-08-24)
>>>>
>>>> i486-pc-linux-gnu
>>>>
>>>> locale:
>>>> LC_CTYPE=zh_CN.UTF-8;LC_NUMERIC=C;LC_TIME=zh_CN.UTF-8;LC_COLLATE=zh_CN.UTF-8;LC_MONETARY=C;LC_MESSAGES=zh_CN.UTF-8;LC_PAPER=zh_CN.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=zh_CN.UTF-8;LC_IDENTIFICATION=C
>>>>
>>>> attached base packages:
>>>> [1] stats
>>>> graphics  grDevices utils     datasets
>>>> methods   base
>>>>
>>>> other
>>>> attached packages:n
>>>> [1] graph_1.22.5
>>>>
>>>> loaded via a
>>>> namespace (and not attached):
>>>> [1] tcltk_2.9.2 tools_2.9.2
>>>>
>>>> My g++ version is 4.4.1 ubuntu
>>>>
>>>>
>>>> thanks.
>>>>
>>>> LiYun
>>>>
>>>> 	[[alternative HTML version deleted]]
>>>>
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>>>>
>>>>         
>>>
>>>
>>>       
>>
>>     
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