[BioC] ArrayExpress

[Audrey Kauffmann]

Hi Colin,

You can use the two functions getAE (to download the data) and
subsequently the function magetab2bioc (please have a look at the help and
vignette) from the ArrayExpress package. The ArrayExpress function is a
wrapper for these two functions so the two outputs will be the same. If
you want to create an object from local MAGE-TAB files, you can you the
function magetab2bioc.
I hope that helps.

Best wishes,
Audrey



> Dear All,
>
> I'm downloading some files using ArrayExpress
>
> rawdata1 = ArrayExpress( "E-TABM-25",path="/tmp/tmp1/", save=TRUE)
>
> What I like to do now is create the rawdata object using the
> downloaded files, i.e.
>
> rawdata2 = readArrayExpress("/tmp/tmp1")
>
> So rawdata1==rawdata2. Is it possible to do this?
>
> Thanks
>
> Colin
>
> --
> Dr Colin Gillespie
> http://www.mas.ncl.ac.uk/~ncsg3/
>
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