[BioC] AffyBatch Chip Subset
Thomas Hampton
Thomas.H.Hampton at Dartmouth.edu
Fri Nov 20 14:48:42 CET 2009
Using read.affy() one ends up with an AffyBatch, a complex R
structure. If, at that point, you decide
you want to run RMA on a subset of the chips you just read in, things
get tricky -- you are definitely
not dealing with a matrix whose columns you can simply reference at
will.
In the past, I have dealt with this by simply starting over. This
makes me feel like sort of an idiot.
Is there a nice way to create a modified AffyBatch containing only the
chips I want?
Thanks.
Tom
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