[BioC] xps - hugene 1.0 st quality assessment?
Tokuyasu, Taku
Tokuyasu at cc.ucsf.edu
Fri Nov 20 20:07:45 CET 2009
Thanks alot for the reply, Christian. ROOT and xps are cool, good luck with it.
_Taku
-----Original Message-----
From: cstrato [mailto:cstrato at aon.at]
Sent: Fri 11/20/2009 8:14 AM
To: Tokuyasu, Taku
Cc: bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] xps - hugene 1.0 st quality assessment?
Dear Taku,
Currently pseudo images, NUSE, RLE plots are not yet implemented in xps,
however these are definitely on my to-do list in the near future.
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l: cstrato at aon.at
_._._._._._._._._._._._._._._._._._
Tokuyasu, Taku wrote:
> Is there a standard workflow to produce RMA/PLM chip pseudo images,
> NUSE, RLE plots and the like for HuGene 1.0 ST arrays in xps? I think
> creating an AffyBatch object may be the way to go, but I'd like to
> confirm this first before figuring out how to create one. Will this run
> into memory issues?
>
>
>
> Regards,
>
>
>
> _Taku
>
>
>
> Taku A. Tokuyasu, PhD
>
> Computational Biologist
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> Biostatistics and Computational Biology Core
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> Email: tokuyasu at cc.ucsf.edu
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