[BioC] xps - hugene 1.0 st quality assessment?

Tokuyasu, Taku Tokuyasu at cc.ucsf.edu
Fri Nov 20 20:07:45 CET 2009


Thanks alot for the reply, Christian.  ROOT and xps are cool, good luck with it.

_Taku

-----Original Message-----
From: cstrato [mailto:cstrato at aon.at]
Sent: Fri 11/20/2009 8:14 AM
To: Tokuyasu, Taku
Cc: bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] xps - hugene 1.0 st quality assessment?
 
Dear Taku,

Currently pseudo images, NUSE, RLE plots are not yet implemented in xps, 
however these are definitely on my to-do list in the near future.

Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n   S.t.r.a.t.o.w.a
V.i.e.n.n.a           A.u.s.t.r.i.a
e.m.a.i.l:        cstrato at aon.at
_._._._._._._._._._._._._._._._._._



Tokuyasu, Taku wrote:
> Is there a standard workflow to produce RMA/PLM chip pseudo images,
> NUSE, RLE plots and the like for HuGene 1.0 ST arrays in xps?  I think
> creating an AffyBatch object may be the way to go, but I'd like to
> confirm this first before figuring out how to create one.  Will this run
> into memory issues?
>
>  
>
> Regards,
>
>  
>
> _Taku
>
>  
>
> Taku A. Tokuyasu, PhD
>
> Computational Biologist
>
> Biostatistics and Computational Biology Core
>
> UCSF, Box 0128
>
> Helen Diller Family Cancer Research Building
>
> 1450 3rd Street, HD555
>
> San Francisco, CA 94158-9001
>
> Tel: (415) 514-1530
>
> Fax: (415) 502-3179
>
> Email: tokuyasu at cc.ucsf.edu
>
>  
>
>
> 	[[alternative HTML version deleted]]
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>
>   



More information about the Bioconductor mailing list