[BioC] Installing affy package

Seth Falcon sfalcon at fhcrc.org
Wed Nov 25 02:16:51 CET 2009


Hi Dorothy,

On 11/24/09 4:43 PM, dorothyc wrote:
> I've been experiencing problems installing the affy package (please
> see output below).  I've installed the latest versions of Biobase and
> affyio already.
>
> #############
> ~/% R CMD INSTALL affy_1.24.2.tar.gz

Is there a reason you are not using the biocLite helper script?  Can you 
please try from a clean R session:

     source("http://bioconductor.org/biocLite.R")
     biocLite("affy")

If that fails, let us know and include the error message and the output 
of sessionInfo().

Thanks,

+ seth

-- 
Seth Falcon
Program in Computational Biology | Fred Hutchinson Cancer Research Center



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