[BioC] Installing affy package

dorothyc dorothyc at bcgsc.ca
Fri Nov 27 19:40:09 CET 2009


Hi Seth and Keith,

It works now.  Thanks very much for your help.

Regards,
Dorothy

On Nov 24, 2009, at 8:59 PM, Seth Falcon wrote:

> On 11/24/09 5:20 PM, Keith Satterley wrote:
>> Hi Dorothy,
>>
>> I'm not sure about the smootScatter error. Sometimes these sort of
>> things are sorted out by having compatible versions. Have you tried
>> using biocLite? Do the following:
>>
>> source("http://bioconductor.org/biocLite.R")
>> biocLite("affy",dependencies=TRUE)
>>
>> This will ensure you get the correct version of affy for your  
>> version of R.
>
> By default, biocLite should install all dependencies.  Setting
> dependencies=TRUE will install many packages that you don't need  
> because
> it includes all packages in the "Suggests" category and does so  
> recursively.
>
> + seth



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