[BioC] problem in make.cdf.package of MoGene-1_0-st-v1.r3.CDF

[Peng Yu]

Hi,

I use the following script to make the MoEx cdf. You can tune it to
make MoGene cdf.

$ cat make_cdf_package.R
library(makecdfenv)
make.cdf.package("MoEx-1_0-st-v1.text.cdf",
packagename="moex10stv1cdf", species="Mus_musculus")

Regards,
Peng

On Thu, Aug 27, 2009 at 4:56 AM, Pengcheng Yang<pengchy at gmail.com> wrote:
> Forgot to paste my session information. Thanks!
>> sessionInfo()
> R version 2.9.2 (2009-08-24)
> i386-pc-mingw32
> locale:
> LC_COLLATE=Chinese_People's Republic of China.936;LC_CTYPE=Chinese_People's
> Republic of China.936;LC_MONETARY=Chinese_People's Republic of
> China.936;LC_NUMERIC=C;LC_TIME=Chinese_People's Republic of China.936
> attached base packages:
> [1] tools     stats     graphics  grDevices utils     datasets  methods
> [8] base
> other attached packages:
> [1] makecdfenv_1.22.0 affyio_1.10.1     affy_1.20.2       Biobase_2.2.2
> loaded via a namespace (and not attached):
> [1] preprocessCore_1.4.0
> On Thu, Aug 27, 2009 at 5:53 PM, Pengcheng Yang <pengchy at gmail.com> wrote:
>>
>> Hi Peng,
>> I want to make a cdf package of MoGene-1_0-st-v1.r3 using the cdf file
>> downloaded
>> from http://www.affymetrix.com/Auth/support/downloads/library_files/MoGene-1_0-st-v1.r3.unsupported-cdf.zip,
>> and did as makecdfenv package's instruction. But failed with the
>> information:
>> -------------------------------------------
>> >
>> > make.cdf.package("MoGene-1_0-st-v1.r3.CDF",spec="mus",version=1.0,author="yang",maintainer="yang")
>> Error in isCDFXDA(file.path(path.expand(cdf.path), filename)) :
>>   VECTOR_ELT() can only be applied to a 'list', not a 'character'
>> --------------------------------------------
>> I googled using this error message and found that you have encountered the
>> same
>> question: http://article.gmane.org/gmane.science.biology.informatics.conductor/24497
>> Could you please tell me how to make the cdf package of this platform? And
>> there is another solution as this linkage
>> suggest: https://stat.ethz.ch/pipermail/bioconductor/2008-July/023403.html,
>> but I do not know the following step.
>> Thanks in advance.
>> --
>> Pengcheng Yang
>> PhD Candidate
>> IOZ,CAS
>
>
>
> --
> Pengcheng Yang
> PhD Candidate
> IOZ,CAS
>