[BioC] Error in GO.db

Mayte Suarez-Farinas farinam at mail.rockefeller.edu
Wed Apr 7 16:39:03 CEST 2010


Hi

I have been getting an error  in packages db family.
First I was getting "Error in checkDBSCHEMA(dbconn, "GO_DB") :
   invalid DB schema version (found 2.0, expected 2.1)"
I decided to reinstall R with version 2.10.1 and reinstall all  
packages again.
still I have problems with GO.
I reinstalled through the Package Manager and by using biocLite  
directly.
It installed fine but when I load it I got the following error:

library(GO.db)
Error in get(hookname, envir = env, inherits = FALSE) :
   internal error -3 in R_decompress1
Error: package/namespace load failed for 'GO.db'

I hope someone can guide me...
Best
Mayte

  sessionInfo()
R version 2.10.1 (2009-12-14)
x86_64-apple-darwin9.8.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] RSQLite_0.7-3       DBI_0.2-5           AnnotationDbi_1.9.8  
Biobase_2.6.1

loaded via a namespace (and not attached):
  [1] affy_1.24.2          affyio_1.14.0        annotate_1.24.1       
Biostrings_2.14.12
  [5] gcrma_2.18.1         genefilter_1.28.2    IRanges_1.4.16        
preprocessCore_1.8.0
  [9] simpleaffy_2.22.0    splines_2.10.1       survival_2.35-7       
tools_2.10.1
[13] xtable_1.5-6




Mayte Suarez-Farinas
Research Associate, The Rockefeller University
Biostatistician, The Rockefeller University Hospital
1230 York Ave, Box 178,
New York, NY, 10021
+1(212) 327-8213



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