[BioC] beadarray illumina Human610-Quadv1_B.bpm

[Nolwenn Le Meur]

Hi everyone,

I am trying to analyse illumina SNP array for GWAS but (as many of  
you) I have annotation problems.
The experiment files are not recent and the chip type is  Human610- 
Quadv1_B.  Does that correspond to the illuminaHumanv1.db for  
annotation?

I have tried to use the Humanv1 annotation with the readIllumina()  
function of the beadarray package but it seems not to be recognized by  
the next functions I use in my analysis (e.g. createBeadSummaryData)

Here is for example the header of one of my txt files with  
measurements :

Code	Grn	GrnX	GrnY	Red	RedX	RedY
10600301	2850	886.7655	7162.112	2645	901.0966	7157.959
10600301	2256	1402.927	1904.34	2426	1417.054	1900.684
10600301	2425	1112.202	5480.152	2405	1126.806	5476.067

and the annotation file I have in hand (also txt)

Human610-Quadv1_B.bpm.Address	Name	Chr	Position
10600301	rs10000010	4	21227772
10600305	rs10006395	4	6913032
10600309	rs10006554	4	168208659

Any help is appreciated.

Nolwenn Le Meur

IRISA Symbiose D151
Université de Rennes I
Campus Beaulieu
35042 Rennes Cedex
France
Phone: +33 2 99 84 71 17
Fax: +33 2 99 84 71 71
E-mail: nlemeur at irisa.fr
Web: http://www.irisa.fr/symbiose/nolwenn_le_meur