[BioC] Could I use "genefilter" package for MArray data ?

Wolfgang Huber whuber at embl.de
Thu Apr 29 00:03:58 CEST 2010


Dear Xiaokuan

you don't use a package on an object - rather, you apply a function to 
an object (or multiple objects). The genefilter package contains many 
different functions. Which function is it exactly that you want to apply 
to your object?

	Best wishes
	Wolfgang


On 28/04/10 21:43, Xiaokuan Wei wrote:
> Dear List,
>
> I have two color arrays. I plan to use limma package to read these arrays and perform some gene filtering.
> I would like to use "genefilter" package, however, I recall that genefilter works only on expression set.
> Could I directly use genefilter packge on MArray object? Or I have to convert it to ExpressionSet object?
> Thanks.
>
> -Xiaokuan
>
>
>
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-- 


Wolfgang Huber
EMBL
http://www.embl.de/research/units/genome_biology/huber



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