[BioC] ShortRead report function crash in x86_64-apple

[Hugo Naya]

Hi,
I've recently installed R2.11.0 and BioC2.6 (MacBook Pro). While in  
the i386-apple-darwin9.8.0 the package "ShortRead" works fine, when I  
tried the same in the x86_64-apple-darwin9.8.0 the function "report"  
crashed with the following error:

  *** caught segfault ***
address 0x110c0a110000, cause 'memory not mapped'

Any clue?
TIA,

Hugo


#####  CHUNK OF CODE ####
library(ShortRead)
exptPath <- system.file("extdata", package = "ShortRead")
sp <- SolexaPath(exptPath)
qaSummary <- qa(sp)
report(qaSummary, dest = "/Users/kangu/tmp/qareport")




#### MY SESSION ####

[R.app GUI 1.33 (5582) x86_64-apple-darwin9.8.0]

 > library(ShortRead)
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

     cbind, Map, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,  
rbind, rep.int, table

Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: lattice
Loading required package: Rsamtools
 > exptPath <- system.file("extdata", package = "ShortRead")
 > sp <- SolexaPath(exptPath)
 > qaSummary <- qa(sp)
 >
 > sessionInfo()
R version 2.11.0 (2010-04-22)
x86_64-apple-darwin9.8.0

locale:
[1] es_ES.UTF-8/es_ES.UTF-8/C/C/es_ES.UTF-8/es_ES.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] ShortRead_1.6.0     Rsamtools_1.0.0     lattice_0.18-5       
Biostrings_2.16.0   GenomicRanges_1.0.1 IRanges_1.6.0

loaded via a namespace (and not attached):
[1] Biobase_2.8.0 grid_2.11.0   hwriter_1.2
 >
 > report(qaSummary, dest = "/Users/kangu/tmp/qareport")

  *** caught segfault ***
address 0x110c0a110000, cause 'memory not mapped'

Traceback:
  1: .Call(fnname, ..., PACKAGE = "grid")
  2: grid.Call("L_textBounds", as.graphicsAnnot(x$label), x$x, x 
$y,     resolveHJust(x$just, x$hjust), resolveVJust(x$just, x 
$vjust),     x$rot, 0)
  3: widthDetails.text(x)
  4: widthDetails(x)
  5: function (x) {    widthDetails(x)}(list(label = "", x = 0.5, y =  
0.5, just = "centre", hjust = NULL,     vjust = NULL, rot = 0,  
check.overlap = FALSE, name = "GRID.text.6",     gp = list(), vp =  
NULL))
  6: .Call.graphics(fnname, ..., PACKAGE = "grid")
  7: grid.Call.graphics("L_setviewport", pvp, TRUE)
  8: push.vp.viewport(X[[1L]], ...)
  9: FUN(X[[1L]], ...)
10: lapply(vps, push.vp, recording)
11: pushViewport(viewport(layout = page.layout, gp = global.gpar,      
name = trellis.vpname("toplevel", prefix = prefix)))
12: printFunction(x, ...)
13: print.trellis(fig)
14: print(fig)
15: .html_img(dir, file, .plotReadQuality(df[df$type ==  
type, ]),     ...)
16: .htmlReadQuality(dest, "readQuality", qa)
17: func(x, dest, type, ...)
18: func(x, dest, type, ...)
19: report(qaSummary, dest = "/Users/kangu/tmp/qareport")
20: report(qaSummary, dest = "/Users/kangu/tmp/qareport")

Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection: