[BioC] AgiMicroRna and readMicroRnaFE
nuin at genedrift.org
Sat Aug 28 18:31:50 CEST 2010
I'm trying to read Agilent miRNA data with AgiMicroRna and readMicroRnaFE, but I'm finding an error due to some different column names. My data has this info
miRNA_105_Dec08 (Read Only) 21-Nov-2008 12:14 Agilent Technologies Scanner G2505C US45102857
and the error on the command
dd.micro <- readMicroRnaAFE(targets.micro, verbose = T)
Error in readGenericHeader(fullname, columns = columns, sep = sep) :
Specified column headings not found in file
I dug a bit and found that 3 columns are missing on the input files:
My question: is there a workaround this? I don't see column headers that would be similar to the three missing. Can I just change some column names to the ones the function is expecting?
Any help is appreciated.
Thanks in advance
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