[BioC] list of annaffy .db files?

Vincent Carey stvjc at channing.harvard.edu
Tue Aug 31 16:57:18 CEST 2010

there are no annaffy .db files -- the .db annotation paradigm is
independent of annaffy

see the annotationDbi vignette for more background

for the ST array you can probably work from the package at


but there is also a probeset version

On Tue, Aug 31, 2010 at 10:46 AM, Andrew Einhorn
<andreweinhorn at gmail.com> wrote:
> I am trying to use annaffy to annotate a hugene10stv1 array.  I cannot find
> the name of the .db annotation packages I am supposed to install.  My code
> thus far looks like:
> anncols <- aaf.handler()[c(1:4, 6,11)]
> anntable <- aafTableAnn(rownames(exprs(results))[1:50], "insert package
> name", anncols)
> Is there a list somewhere of the names of all the annaffy .db files?
> Regards
> Andrew
>        [[alternative HTML version deleted]]
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