[BioC] combineBeadLevelLists() in Bioconductor 2.8 beadarray

[Mark Dunning]

Hi Alex,

The functionality still exists in beadarray, but can be called using
the generic 'combine' rather than combineBeadLevelLists.

Best wishes,

Mark

On Tue, Dec 7, 2010 at 10:20 AM, Alex Gutteridge
<alexg at ruggedtextile.com> wrote:
> Hi,
>
> Older versions of beadarray have a combineBeadLevelList() for combining
> bead level data lists read from two different Illumina chips into one list.
> In the latest beadarray this seems to have been removed, but I can't find
> anything in the documentation describing the correct way to do this with
> the new beadLevelData class. Am I missing something obvious or is this no
> longer supported?
>
>> sessionInfo()
> R version 2.12.0 (2010-10-15)
> Platform: x86_64-unknown-linux-gnu (64-bit)
>
> locale:
>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>  [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
>  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] splines   stats     graphics  grDevices utils     datasets  methods
> [8] base
>
> other attached packages:
>  [1] reshape_0.8.3          plyr_1.2.1             nlme_3.1-97
>  [4] lumiHumanAll.db_1.12.0 org.Hs.eg.db_2.4.6     RSQLite_0.9-3
>  [7] DBI_0.2-5              AnnotationDbi_1.12.0   lumi_2.2.0
> [10] limma_3.6.6            latticeExtra_0.6-14    RColorBrewer_1.0-2
> [13] lattice_0.19-13        contrast_0.13          Design_2.3-0
> [16] Hmisc_3.8-3            survival_2.36-1        Cairo_1.4-5
> [19] beadarray_2.0.2        Biobase_2.10.0
>
> loaded via a namespace (and not attached):
>  [1] affy_1.28.0           affyio_1.18.0         annotate_1.28.0
>  [4] cluster_1.13.2        grid_2.12.0           hdrcde_2.14
>  [7] KernSmooth_2.23-4     MASS_7.3-8            Matrix_0.999375-44
> [10] methylumi_1.4.0       mgcv_1.7-1            preprocessCore_1.12.0
> [13] tcltk_2.12.0          tools_2.12.0          xtable_1.5-6
>
> --
> Alex Gutteridge
>
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