[BioC] snapCGH package not loaded

João Fadista Joao.Fadista at agrsci.dk
Tue Feb 9 17:34:07 CET 2010


Hi,

I downloaded the latest version of the snapCGH package, but it gives an error when I try to load it. Here is the error message:

> library(snapCGH)
Loading required package: limma
Loading required package: tilingArray
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: pixmap
Loading required package: DNAcopy

Attaching package: 'DNAcopy'


        The following object(s) are masked from package:tilingArray :

         segment 

Loading required package: GLAD
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared library 'C:/PROGRA~1/R/library/GLAD/libs/GLAD.dll':
  LoadLibrary failure:  The specified module could not be found.


In addition: Warning messages:
1: package 'limma' was built under R version 2.8.0 and help will not work correctly
Please re-install it 
2: package 'Biobase' was built under R version 2.8.0 and help will not work correctly
Please re-install it 
3: package 'pixmap' was built under R version 2.10.1 
Error: package 'GLAD' could not be loaded
> sessionInfo()
R version 2.10.0 (2009-10-26) 
i386-pc-mingw32 

locale:
[1] LC_COLLATE=English_United Kingdom.1252  LC_CTYPE=English_United Kingdom.1252    LC_MONETARY=English_United Kingdom.1252
[4] LC_NUMERIC=C                            LC_TIME=English_United Kingdom.1252    

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] DNAcopy_1.20.0     tilingArray_1.24.0 pixmap_0.4-10      Biobase_2.2.1      limma_2.16.3      

loaded via a namespace (and not attached):
 [1] affy_1.20.0          affyio_1.10.1        annotate_1.20.1      AnnotationDbi_1.4.2  DBI_0.2-4            genefilter_1.22.0    grid_2.10.0         
 [8] lattice_0.17-26      preprocessCore_1.4.0 RColorBrewer_1.0-2   RSQLite_0.7-1        splines_2.10.0       strucchange_1.3-7    survival_2.35-7     
[15] vsn_3.8.0           
> 


Does anyone knows what seems to be the problem?
Thanks in advance,
Joao Fadista


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