[BioC] snapCGH package not loaded

[Sean Davis]

On Tue, Feb 9, 2010 at 11:34 AM, João Fadista <Joao.Fadista at agrsci.dk> wrote:
>
> Hi,
>
> I downloaded the latest version of the snapCGH package, but it gives an error when I try to load it. Here is the error message:
>
>> library(snapCGH)
> Loading required package: limma
> Loading required package: tilingArray
> Loading required package: Biobase
> Loading required package: tools
>
> Welcome to Bioconductor
>
>  Vignettes contain introductory material. To view, type
>  'openVignette()'. To cite Bioconductor, see
>  'citation("Biobase")' and for packages 'citation(pkgname)'.
>
> Loading required package: pixmap
> Loading required package: DNAcopy
>
> Attaching package: 'DNAcopy'
>
>
>        The following object(s) are masked from package:tilingArray :
>
>         segment
>
> Loading required package: GLAD
> Error in inDL(x, as.logical(local), as.logical(now), ...) :
>  unable to load shared library 'C:/PROGRA~1/R/library/GLAD/libs/GLAD.dll':
>  LoadLibrary failure:  The specified module could not be found.
>
>
> In addition: Warning messages:
> 1: package 'limma' was built under R version 2.8.0 and help will not work correctly
> Please re-install it
> 2: package 'Biobase' was built under R version 2.8.0 and help will not work correctly
> Please re-install it
> 3: package 'pixmap' was built under R version 2.10.1
> Error: package 'GLAD' could not be loaded
>> sessionInfo()
> R version 2.10.0 (2009-10-26)
> i386-pc-mingw32
>
> locale:
> [1] LC_COLLATE=English_United Kingdom.1252  LC_CTYPE=English_United Kingdom.1252    LC_MONETARY=English_United Kingdom.1252
> [4] LC_NUMERIC=C                            LC_TIME=English_United Kingdom.1252
>
> attached base packages:
> [1] tools     stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] DNAcopy_1.20.0     tilingArray_1.24.0 pixmap_0.4-10      Biobase_2.2.1      limma_2.16.3
>
> loaded via a namespace (and not attached):
>  [1] affy_1.20.0          affyio_1.10.1        annotate_1.20.1      AnnotationDbi_1.4.2  DBI_0.2-4            genefilter_1.22.0    grid_2.10.0
>  [8] lattice_0.17-26      preprocessCore_1.4.0 RColorBrewer_1.0-2   RSQLite_0.7-1        splines_2.10.0       strucchange_1.3-7    survival_2.35-7
> [15] vsn_3.8.0
>>
>
>
> Does anyone knows what seems to be the problem?

Hi, Joao.  It looks like you have quite a mixture of packages from
different releases and that the GLAD package may be broken.  I'd
suggest reinstalling at least the GLAD package (using biocLite).
Probably better, though, is to upgrade to the newest version of R and
reinstall all the packages of interest using biocLite().

Sean