[BioC] Is color.pathway.by.objects (KEGGSOAP) working?

John Zhang jzhang at jimmy.harvard.edu
Mon Jan 4 19:05:10 CET 2010

Some changes related to KEGG SOAP server were not reflected in old versions of 
BioC. Try updating your R and BioC to the latest version. 

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>Subject: [BioC] Is color.pathway.by.objects (KEGGSOAP) working?
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>Dear All,
>when I execute the example code for 'color.pathway.by.objects' from 
>KEGGSOAP package, firefox shows me an empty page.
>Any suggestions?
>Thanks for the replies!
> > sessionInfo()
>R version 2.9.0 (2009-04-17)
>LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United 
>Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252
>attached base packages:
>[1] stats     graphics  grDevices utils     datasets  methods   base     
>other attached packages:
>[1] RCurl_0.98-1    bitops_1.0-4.1  KEGGSOAP_1.18.0
>loaded via a namespace (and not attached):
>[1] SSOAP_0.4-6 XML_2.3-0  
> >
>Staff Scientist
>AIT Austrian Institute of Technology GmbH
>2444 Seibersdorf | Austria
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Jianhua Zhang
Department of Medical Oncology
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084

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