[BioC] agilent reading array data.

Francois Pepin fpepin at cs.mcgill.ca
Thu Jan 7 02:32:00 CET 2010


it's difficult to say for sure without any additional details.

One possibility is some strange R configuration, but we can't tell 
without the information from sessionInfo().

My guess that one of your file is likely corrupt. It is the same size as 
the others? Can you read your data if you skip that file?


On 12/30/2009 06:16 AM, neeraj rana wrote:
> hi,
>     when i am using agilent data to read in bioconductor in Agi4x44PreProcess
> package i am getting following error.Is there any solution for this error.
>> dd_ayur=read.AgilentFE(targets_ayur, makePLOT=FALSE)
> Read US83000164_251485049982_S01_GE1_105_Dec08_1_1.txt
> Read US83000164_251485049982_S01_GE1_105_Dec08_1_2.txt
> Read US83000164_251485049982_S01_GE1_105_Dec08_1_3.txt
> Read US83000164_251485049982_S01_GE1_105_Dec08_1_4.txt
> Read US83000164_251485049983_S01_GE1_105_Dec08_1_1.txt
> Read US83000164_251485049983_S01_GE1_105_Dec08_1_2.txt
> Read US83000164_251485049983_S01_GE1_105_Dec08_1_3.txt
> Error in RG[[a]][, i]<- obj[, columns[[a]]] :
>    number of items to replace is not a multiple of replacement length
> 	[[alternative HTML version deleted]]
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

More information about the Bioconductor mailing list