[BioC] Combine two mapped files

Cei Abreu-Goodger cei at ebi.ac.uk
Fri Jan 8 17:34:04 CET 2010

Hi Arnaud,

One option would always be to combine them with maq before reading them 
into R. Check out the 'mapmerge' command in maq.



Droit Arnaud wrote:
> Hello,
> I have two mapped files from Chip_seq experiments produced by maq software.
> I read this files with the readAligned function from the ShortRead package.
> I just want to combine this two files in one, I am wondering if anyone know the best method to do this.  I am trying to use rbind or cbind ?
> dataIP1<- readAligned(s_5_sequence.maq.map",type="MAQMap")
> dataIP2<- readAligned(s_6_sequence.maq.map",type="MAQMap")
> dataIP3<-...
> Thanks
> Arnaud.
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