[BioC] Package on clinical data analysis

Vincent Carey stvjc at channing.harvard.edu
Fri Jan 15 12:28:16 CET 2010

You need to scroll to the bottom of the first page at Bioconductor.org
-- there are pictures of books at the bottom and you can click on the
images of the Springer volumes to find out about the books that
address the topic of your question in great detail.  In the ALL
experimental data package there is a very terse vignette that shows
how an ExpressionSet unites expression and clinical information, and
shows how to build a simple tree structured classifier relating
expression to leukemia type.  The books have numerous chapters devoted
to your concern.

On Fri, Jan 15, 2010 at 5:47 AM, David martin <vilanew at gmail.com> wrote:
> Hi,
> I would like to know if there is a package to analyse gene expression and
> correlate with a clinical variable ?
> Limma does all sort of gene expression analysis but is there any package to
> correlate that with clinical variables ?
> thanks,
> david
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